YACHT: an ANI-based statistical test to detect microbial presence/absence in a metagenomic sample
David Koslicki, Stephen White, Chunyu Ma, Alexei Novikov
Published on Bioinformatics, 2024 Feb 01
KGML-xDTD: A Knowledge Graph-based Machine Learning Framework for Drug Treatment Prediction and Mechanism Description
Chunyu Ma, Zhihan Zhou, Han Liu, David Koslicki
Published on GigaScience, 2023 Aug 21
ARAX: a graph-based modular reasoning tool for translational biomedicine
Amy K Glen, Chunyu Ma, Luis Mendoza, Finn Womack, EC Wood, Meghamala Sinha, Liliana Acevedo, Lindsey G Kvarfordt, Ross C Peene, Shaopeng Liu, Andrew S Hoffman, Jared C Roach, Eric W Deutsch, Stephen A Ramsey, David Koslicki
Published on Bioinformatics, 2023 Feb 08
RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine
E. C. Wood, Amy K. Glen, Lindsey G. Kvarfordt, Finn Womack, Liliana Acevedo, Timothy S. Yoon, Chunyu Ma, Veronica Flores, Meghamala Sinha, Jared C. Roach, Luis Mendoza, Andrew S. Hoffman, Eric W. Deutsch, David Koslicki, Stephen A. Ramsey
Published on BMC bioinformatics, 2022 Sep 29
Plasma Metabolomics of Intermediate and Neovascular Age-Related Macular Degeneration Patients
Sabrina L Mitchell, Chunyu Ma, William K Scott, Anita Agarwal, Margaret A Pericak-Vance, Jonathan L Haines, Dean P Jones, Karan Uppal, Milam A Brantley Jr
Published on Cells, 2021 Nov 12
Addressing the batch effect issue for LC/MS metabolomics data in data preprocessing
Qin Liu, Douglas Walker, Karan Uppal, Zihe Liu, Chunyu Ma, ViLinh Tran, Shuzhao Li, Dean P Jones, Tianwei Yu
Published on Scientific reports, 2020 Aug 17
Reference Standardization for Quantification and Harmonization of Large-Scale Metabolomics
Ken H Liu, Mary Nellis, Karan Uppal, Chunyu Ma, ViLinh Tran, Yongliang Liang, Douglas I Walker, Dean P Jones
Published on Analytical Chemistry, 2020 Jun 03
FeatSNP: An Interactive Database for Brain-Specific Epigenetic Annotation of Human SNPs
Chunyu Ma, Pamela Madden, Paul Gontarz, Ting Wang and Bo Zhang
Published on Frontiers in Genetics, 2019 Apr 2
Phytochelatin database: a resource for phytochelatin complexes of nutritional and environmental metals
Kristine K Dennis, Karan Uppal, Ken H Liu, Chunyu Ma, Bill Liang, Young-Mi Go, Dean P Jones
Matheus B. Victor, Michelle Richner, Hannah E. Olsen, Seong Won Lee, Alejandro M. Monteys, Chunyu Ma, Christine J. Huh, Bo Zhang, Beverly L. Davidson, X. William Yang & Andrew S. Yoo
Published on Nature Neuroscience, 2018 Feb 05
xMWAS: a data-driven integration and differential network analysis tool
Karan Uppal, Chunyu Ma, Young-Mi Go, Dean P Jones
Published on Bioinformatics, 2018 Jun 15
Reciprocal genomic evolution in the ant-fungus agricultural symbiosis
Sanne Nygaard, Haofu Hu, Cai Li, Morten Schiøtt, Zhensheng Chen, Zhikai Yang, Qiaolin Xie, Chunyu Ma, Yuan Deng, Rebecca B. Dikow, Christian Rabeling, David R. Nash, William T. Wcislo, Seán G. Brady, Ted R. Schultz, Guojie Zhang & Jacobus J. Boomsma
